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Wednesday, November 29, 2017

Nobel prize award ceremony - 10th December 2017

Functioning of our inner clock
Most living organisms anticipate and adapt to daily changes in the environment. During the 18th century, the astronomer Jean Jacques d'Ortous de Mairan studied mimosa plants, and found that the leaves opened towards the sun during daytime and closed at dusk. He wondered what would happen if the plant was placed in constant darkness. He found that independent of daily sunlight the leaves continued to follow their normal daily oscillation Plants seemed to have their own biological clock.

Other researchers found that not only plants, but also animals and humans, have a biological clock that helps to prepare our physiology for the fluctuations of the day. This regular adaptation is referred to as the circadianrhythm, originating from the Latin words circa meaning "around" and diesmeaning "day". But just how our internal circadian biological clock worked remained a mystery.
During the 1970's, Seymour Benzer and his student Ronald Konopka asked whether it would be possible to identify genes that control the circadian rhythm in fruit flies. They demonstrated that mutations in an unknown gene disrupted the circadian clock of flies. They named this gene period. But how could this gene influence the circadian rhythm?
This year's Nobel Laureates, who were also studying fruit flies, aimed to discover how the clock actually works. In 1984, Jeffrey Hall and Michael Rosbash, working in close collaboration at Brandeis University in Boston, and Michael Young at the Rockefeller University in New York, succeeded in isolating the period gene. Jeffrey Hall and Michael Rosbash then went on to discover that PER, the protein encoded by period, accumulated during the night and was degraded during the day. Thus, PER protein levels oscillate over a 24-hour cycle, in synchrony with the circadian rhythm.
The next key goal was to understand how such circadian oscillations could be generated and sustained. Jeffrey Hall and Michael Rosbash hypothesized that the PER protein blocked the activity of the period gene. They reasoned that by an inhibitory feedback loop, PER protein could prevent its own synthesis and thereby regulate its own level in a continuous, cyclic rhythm 
Simplified illustration of the feedback regulation of the period gene
The figure shows the sequence of events during a 24h oscillation. When the period gene is active, period mRNA is made. The mRNA is transported to the cell's cytoplasm and serves as template for the production of PER protein. The PER protein accumulates in the cell's nucleus, where the period gene activity is blocked. This gives rise to the inhibitory feedback mechanism that underlies a circadian rhythm.
The model was tantalizing, but a few pieces of the puzzle were missing. To block the activity of the period gene, PER protein, which is produced in the cytoplasm, would have to reach the cell nucleus, where the genetic material is located. Jeffrey Hall and Michael Rosbash had shown that PER protein builds up in the nucleus during night, but how did it get there? In 1994 Michael Young discovered a second clock gene, timeless, encoding the TIM protein that was required for a normal circadian rhythm. In elegant work, he showed that when TIM bound to PER, the two proteins were able to enter the cell nucleus where they blocked period gene activity to close the inhibitory feedback loop.
The molecular components of the circadian clock.
Simplified illustration of the molecular components of the circadian clock.
Such a regulatory feedback mechanism explained how this oscillation of cellular protein levels emerged, but questions lingered. What controlled the frequency of the oscillations? Michael Young identified yet another gene, doubletime, encoding the DBT protein that delayed the accumulation of the PER protein. This provided insight into how an oscillation is adjusted to more closely match a 24-hour cycle.
The biological clock is involved in many aspects of our complex physiology. We now know that all multicellular organisms, including humans, utilize a similar mechanism to control circadian rhythms. A large proportion of our genes are regulated by the biological clock and, consequently, a carefully calibrated circadian rhythm adapts our physiology to the different phases of the day. Since the seminal discoveries by the three laureates, circadian biology has developed into a vast and highly dynamic research field, with implications for our health and wellbeing.
The circadian clock
The circadian clock anticipates and adapts our physiology to the different phases of the day. Our biological clock helps to regulate sleep patterns, feeding behavior, hormone release, blood pressure, and body temperature.
https://www.nobelprize.org/nobel_prizes/medicine/laureates/2017/press.html 

Wednesday, October 4, 2017

Nobel prize in medicine 2017 for biological clock research

2017-10-02

The Nobel Assembly at Karolinska Institutet has today decided to award
the 2017 Nobel Prize in Physiology or Medicine
jointly to
Jeffrey C. Hall, Michael Rosbash and Michael W. Young

for their discoveries of molecular mechanisms controlling the circadian rhythm
https://www.nobelprize.org/nobel_prizes/medicine/laureates/2017/press.html

Saturday, September 30, 2017

Links between gut bacteria, weight gain and circadian rhythm

The obesity epidemic is one of the fastest growing threats to public health. More than 70 percent of American adults are currently overweight or obese, with other countries catching up quickly. This is putting our population at higher risk of a wide variety of preventable diseases. Despite a multi-billion dollar diet industry, we continue to get larger and larger. Could this really be entirely due to our unhealthy diets? New research on gut bacteria and weight gain suggests that this dangerous trend is not just due to our food choices, but to changes in our gut bacteria.
Several major studies have linked gut bacteria and weight gain. Mice fed high-calorie diets are more likely to gain weight when they have certain imbalances of gut bacteria. Humans, similarly, are more likely to be obese when they have high levels of specific gut bacteria such as Firmicutes. Our microbiome is an integral part of our health, so these imbalances can also lead to vitamin malabsorption, fatigue, depression and a wide variety of common conditions.
This is significant because the balance of human GI bacteria, also known as our microbiome, is rapidly changing. Cultures that eat a lot of whole grains and vegetables have very different kinds of bacteria in their intestines. As our eating habits change, our gut bacteria are rapidly changing in response. Our food choices do not just add to the number of calories we eat, but also the way these calories are processed. But how can gut bacteria cause weight gain and even obesity? The circadian rhythm of the GI tract may be the link.
Like all organ systems, our GI tract has a distinctive circadian rhythm. This rhythm is partially set by external factors, especially what times we eat. This, in turn, affects gut bacteria. Bacteria, like humans, partially set their internal clocks by what times they are most active. When we eat, they also must “eat.”
Changing our mealtimes or our sleep-wake cycles can dramatically alter the circadian rhythms of bacteria in our GI tract. Some bacteria flourish under these changes and can quickly become the predominant bacteria in our intestines when we rapidly change our sleep-wake cycles. In turn, these bacteria appear to contribute to weight gain and obesity. Until recently, this was believed to be the reason for the link between jet lag and weight gain. However, new research suggests that the bacteria themselves may affect our intestinal circadian rhythms as much as our internal clocks affect them.
Researchers studied how a high-fat diet affected two populations of mice: one with a typical microbiome and one bred to have no GI bacteria at all. The ones with no GI bacteria handled their unhealthy diet much better than the other group. When researchers looked closer at the data, this appeared to be due to an intestinal protein called NFIL3.
Mice that had a normal microbiome had higher levels of a protein called NFIL3. NFIL3 is an important cue for the intestines, telling them how much fat to absorb. It is released in a cyclic manner, which helps our circadian rhythm to regulate food intake. Mice with no bacteria produce extremely low levels of NFIL3 on a cyclic basis and thus absorb very little fat even when eating a very high-fat diet. Gut bacteria appear to somehow stimulate NFIL3 production regardless of the time of day, effectively hijacking the circadian rhythm of the intestinal tract. This indiscriminate absorption of fat may, in turn, be one of the mechanisms by which some gut bacteria cause weight gain.
Maintaining a healthy and diverse microbiome is key to whole-body health and a reasonable weight. If you are struggling to develop healthy intestinal bacteria, consider the following strategies:
  • Eat a great deal of fiber, especially from plant foods such as whole grains, fruits and vegetables.
  • Refuse refined and processed foods such as white sugar that encourage the growth of less healthy bacteria.
  • Enjoy fermented foods such as yogurt and sauerkraut.
  • Use fewer antacids and other medications that interfere with gut bacterial health.
  • Keep your sleep-wake cycles steady, as these can affect your bacterial balance.
  • Consider taking a daily probiotic supplement to keep a steady intake of beneficial bacteria.
These simple changes can change your microbiome in positive ways by seeding your intestines with the right kind of bacteria while discouraging the growth of bacteria that contribute to obesity.
For many Americans, our diets have led to a vicious cycle. Our dysregulated circadian rhythm leads to changes in bacteria, which, in turn, further affect our circadian rhythm. This can lead to obesity and other dangerous health conditions. However, there is hope. There are ways to achieve balance in your gut bacteria and thus change the way your body metabolizes food, stopping the cycle once and for all.

https://www.chronobiology.com/gut-bacteria-can-hijack-intestinal-circadian-rhythm-causing-weight-gain/

Wednesday, August 30, 2017

Project work for UG/PG life science students for academic year 2017-18

Third batch of  Project work for UG/PG life science students for academic year 2017-18 has been started from 19th August 2017.

Late registration is allowed till first week of September.

Register at: http://goo.gl/forms/rHi8gypfxGyzQ03C2

Saturday, July 29, 2017

Chronobiology outreach programs for all age groups and background

Select the programs / workshops suitable for you

Most of the programs start every year in August. Can be personalized if sufficient number of participants are avaialble.

1) Project work for higher secondary school children

- Observation of cyclic phenomenon in nature

- Appreciating all living matter undergoing rhythmicity

- Report writing on cyclic activities in humans


2)  Project work for UG / PG life science students

- Chronotype analysis of predefined population

- Statistical analysis of biological rhythmic data

- Report writing on data analysis and interpretation


3) Workshop for life science teachers

- Lecture series on basics of chronobiology

- Designing of experiments in chronobiology

- Incorporation on chronobiology in curriculum


4) Workshop for professionals with odd work schedule 
     [IT professionals/shift workers/frequent flyers]

- Lecture series on basics of biological clock

- Guidance on synchronizing external / internal clock

- Circadian rhythm in health and disease


5) Consultancy for patients with metabolic disorders

- Chronotype analysis and counseling

- Clock genes analysis and counseling

- Chronome analysis

Saturday, July 8, 2017

Announcement of Project Work for Academic year 2017-18

           Institute of Chronobiology Education & Research 
(जैव-चक्रीय आवर्तन प्रशिक्षण आणि संशोधन संस्था)
                                                                                                                      
Final year project work for UG & PG life science students



Chronobiology
Chronobiology is a multidisciplinary branch of science dealing with study of biological rhythms. The free-running biological rhythms reflect the endogenous mechanisms of cyclic temporization whose expression is morphologically seen as an internal clock called body clock.

Biological rhythms
All levels of biological integration, such as ecosystem, population, group, individual, organ-system, organ, tissue, cell, and subcellular structures exhibit rhythms with diverse frequencies. The periods of most of the documented biological rhythms match with that of any one of geophysical cycles present in the nature such as ultradian, circadian, infradian or circannual rhythms. 

Genetics of biological rhythms
There are at least nine clock genes that play key role in the mammalian body clock.  The temporal effect of genetic programming on genome is known as chronome. A branch of chronobiology dealing with chronome analysis is called chronomics.

Chronobiometry
Chronobiology can be studied either by use of model systems or by means of autorhythmometry. Chronobiological data is analyzed by inferential and non-inferential chronobiometry. Bio-rhythmic data analysis requires special statistical tools due to its complexity.

Chronoptherapy
Chronobiological approach of disease diagnosis and management has a lot of untapped potential. We need sufficient clinical data to validate this hypothesis. Most of the life style diseases that we face today have circadian disruption as the major reason which is not at all considered during prognosis.


Project details

Registration options:
By Phone/Email/Registration by filling out the form at link: http://goo.gl/forms/rHi8gypfxGyzQ03C2

Duration:  12th August 2017 – 12th May 2018

Nature of project work

Seminars – one interactive session / week on Saturday 4 – 6 pm
Data collection / analysis – Minimum two readings per day for six months on self and/or on volunteers.
Midterm and final evaluation – Open book test

Project report submission – Data compilation and interpretation

Course content (2C / 30 lectures)
Introduction to Chronobiology (5), Systemic of circadian system (7), Relevance of rhythmicity in human welfare (4), Chronobiometery (5), Nasal cycle (7), Biological rhythm as diagnostic tool (2)

Literature
Seminars, PPTs, Videos, Research articles
Reference book: Chronobiology – Biological timekeeping; Edited by Dunlap, Loros, & DeCoursey

Fees: Not uniform / based on interview with the Mentor


Highlights

ü  Understanding the dimension of time in biological systems
ü  Firsthand experience of statistical analysis of biological rhythmic data
ü  Work experience at the interface of research and diagnostic application of biological rhythm
ü  Certificate of completion from ICER


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Project coordinator

Prashant S. Duraphe, PhD (University of Würzburg, Germany)

Contact details: 8888810554/02025519099, duraphe@gmail.com,

Friday, June 30, 2017

Institute of Chronobiology Education and Research

Biological Rhythm Research Laboratory is now Institute of Chronobiology Education and Research

Project work in Chronobiology for academic year 2017-18 will start in August 2017

More details will be updated soon.