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Sunday, June 30, 2019

Suprachaismatic nucleus (SCN) as a mammalian pacemaker


Light is detected exclusively by the retina, in large part by intrinsically photosensitive retinal ganglion cells (ipRGCs) which express the non-visual opsin, melanopsin. Neural signals from these cells are conveyed to the SCN via the retino-hypothalamic tract (RHT). Thereby, the phase of the SCN clock is indirectly reset in response to light, and in turn, timing information is relayed to the network of peripheral clocks via a complex combination of blood-borne signals, feeding-fasting rhythms and core body temperature changes. Within the same genus, the circadian system is significantly more sensitive to light in shade-dwelling species than in those species adapted to live in more brightly illuminated areas.

Cytologically, the SCN contain both neurons and astroglia with an estimated ratio of 7–8:1 in the rat SCN. The SCN are bilobed, situated on either side of the ventral floor of the third ventricle in the periventricular zone of the anterior hypothalamus. In the adult laboratory rat, they are ~0.7 to 1 mm in length. 

Physiologically, four key features define circadian timekeeping in the nocturnal rodent SCN: 
(1) The SCN exhibits daily changes in the uptake of 2-deoxyglucose, a marker of metabolic activity. 

(2) electrophysiological recordings show that SCN neurons of nocturnal rodents are spontaneously active and intrinsically generate ~24 h rhythms in the frequency of action potential (AP) discharge. 

(3) The 24 h variation in electrical activity does not depend on ‘network’ properties as dissociated SCN neurons isolated in culture also vary daily discharge of AP firing. 

(4) SCN neuronal clocks are predisposed to synchronise their activity with another, and intercellular communication is necessary for this process.

SCN input – 

1) The retinohypothalamic tract (RHT) is a monosynaptic pathway from melanopsin-containing retinal ganglion cells to the SCN,

2) The geniculohypothalamic tract (GHT) mostly innervates the ventral and central aspects of the rodent SCN and originates from neurons in the intergeniculate leaflet (IGL) of the visual thalamus,

3) The median raphe (MR) innervates the ventral and central SCN aspects, and the neurotransmitter serotonin (5-hydroxytryptophan or 5-HT) is the characteristic neurochemical of this pathway.

In the SCN, the terminations of the RHT, GHT, and MR pathways overlap, particularly in the ventral aspects. Perhaps unsurprisingly, activation of non-photic pathways can limit the resetting effects of light pulses, while acute light exposure can reduce or eliminate shifts to non-photic stimuli. Thus, SCN neurons actively integrate photic and non-photic cues to shape the phase of the molecular clock and the entrainment of the circadian system to the external world.

Visualisation of gene expression by in situ hybridisation indicates that not all regions of the SCN rhythmically express clock genes at the same phase or perhaps at all. While the SCN as a whole functions as the mammalian brain’s master circadian clock, intra-SCN timekeeping is heterogeneous with some areas appearing to lead daily changes in molecular clock activity, while others follow.

Neurochemically, all SCN neurons contain GABA, but they can, to an extent, be distinguished by the neuropeptides that they synthesise. The prominent neuropeptides contained in SCN neurons include vasoactive intestinal polypeptide (VIP), gastrin-releasing peptide (GRP), and arginine vasopressin (AVP).

The peptide prokineticin-2 (PK2) is synthesised in the mouse SCN and is implicated in conveying circadian information to the rest of the brain. Levels of PK2 mRNA in the SCN vary across the light-dark and circadian cycles.

Most of our current knowledge of the biological timekeeping mechanisms in mammals arises from laboratory investigations focused on nocturnal rodent models, but studies in diurnal species are much more limited. Comparative analysis of diurnal species from different taxonomic groups is necessary to identify convergent adaptations that are common to a diurnal niche and therefore more likely to be shared by most diurnal species, including humans.

A fundamental property of the circadian system is the PRC which describes the resetting effects of light on the SCN clock. As stated earlier, the shifting effects of light on the SCN clock depend on the time of day when light is applied. With pulses of light given during the night, the pattern of PRC appears to be quite similar across a wide range of diurnal and nocturnal species.

The typical organisation of the SCN into ‘core’ and ‘shell’ described in nocturnal species seems to be present in some but not all diurnal species.
Patterns of Per1 and Per2 expression, with high levels during the light phase and low levels at night, have been found in all diurnal rodent species studied so far.

Summary and Questions of Interests
·    SCN neurons exhibit intrinsic circadian variation in molecular, metabolic, and electrophysiological characteristics.

·      Regional differences in neurochemical and timekeeping characteristics in the SCN are pronounced in some species.
·      SCN molecular clock does not appear to differ between nocturnal and diurnal species.
·      What processes and mechanisms make an animal diurnal?
·       How do SCN output signals influence activity in specific target areas?
·       Why are ‘core’ and ‘shell’ compartments more discernable in some species and not others?
·      What are the mechanisms underlying temporal niche switching within the same species?


    
Circadian phase markers

Unlike nonhuman models, scientists do not have direct access to the SCN in humans and instead use marker rhythms driven by the SCN to indicate phase, amplitude, and period of the circadian clock.

The most commonly used circadian marker rhythm in humans is the melatonin rhythm. Melatonin is easily measured in saliva, blood, and urine. Two other commonly used circadian marker rhythms in humans are body temperature and cortisol.

Accurate assessment of circadian period in sighted humans requires assessment in the absence of external synchronizers, or under tightly controlled exposure to synchronizers, which ensures their even distribution with respect to circadian phase.


Biological Timekeeping: Cloks, Rhythms & Behavior, edited by Vinod Kumar, Springer 2017

Friday, May 31, 2019

Profile: Institute of Chronobiology Education & Research (June 2016 - June 2019)

Institute of Chronobiology Education & Research (ICER)  is completing 3 years next month. Though modest and low profile yet, we are committed to the chosen path of education, research and consultancy in chronobiology.

The projects undertaken by us was presented at various platforms and were appreciated as well but still we are waiting to get funding for either of our projects.

Since March 2018, Late Prin. B. V. Foundation at SP College campus is firmly associated with us and providing all the infrastructural facilities for courses, workshops and experimentation.

Here is the compiled profile of the work done so far and ongoing as well as prospective activities.

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Institute of Chronobiology Education & Research
(जैव-चक्रीय आवर्तन प्रशिक्षण आणि संशोधन संस्था)

161A, Modibaug, Ganeshkhind Road, Shivajinagar, Pune 411016
Tel No: 25519099, 8888810554     Email: duraphe@gmail.com


Chronobiology is a multidisciplinary branch of science dealing with study of biological rhythms. The free-running biological rhythms reflect the endogenous mechanisms of cyclic temporization whose expression is morphologically seen as an internal clock called body clock.

All levels of biological integration ranging from ecosystem to sub-cellular structures exhibit rhythms with diverse frequencies. Periods of most of the documented biological rhythms match with that of any one of geophysical cycles present in the nature.

Due to technology dependent round the clock work culture of humans, the entire ecosystem is facing unprecedented survival threat. Our most of the lifestyle diseases are invariably associated with altered biological clock mechanism. Hence understanding chronobiological principles and devising strategies for diagnosis and treatment of circadian dysfunction is relevant like never before.

Institute of Chronobiology Education & Research is working for popularizing the subject by providing academic courses for students and lifestyle management workshops for the professionals.


Year of inception – 2016

Type – Proprietor firm

Scope – Teaching / Research / Consultancy in Chronobiology

Affiliation – Indian Society for Chronobiology (Since March 2019)

Director – Prashant S. Duraphe, PhD

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Publications


Refereed Journals
None


Refereed Conference Proceedings

·        Ankita AS. Galinde, Aishwarya V. Bhurke, Prashant S. Duraphe (2019); Development of nasal sensors for nasal cycle characterization- Studying the ultradian biological rhythm. International Symposium on Biological Rhythms- 11th -13th March 2019, Ch. Charan Singh University, Meerut, India.

·    Ankita Galinde, Prashant S. Duraphe (2018); - Standardization of nasal cycle by temperature based nasal sensor. - World Ayurved Congress and Arogya Expo. 14th -17th December 2018, Gujarat University Convention and Exhibition Center, Ahmedabad, India.

·    Ankita Galinde, Prashant S. Duraphe (2018); Development of nasal sensors for nasal cycle characterization- Studying the ultradian body clock - World Congress on Chronomedicine- 17th -19th November 2018- King George’s Medical University, Lucknow, India.



Contributed Presentations

·     Invited talk on ‘Standardization of nasal cycle by temperature based nasal sensor’ at World Ayurved Congress and Arogya Expo, Gujarat University Convention and Exhibition Center, Ahmedabad, India 2018.

·        Invited talk on ‘Chronobiology to Chronomedicine’ at training program in Traditional medicine and Integrative health organized by Interdisciplinary School of Health Sciences, Savitribai Phule Pune University, India 2018

  
Students’ achievements at various platforms

1) Development of Nasal sensors for nasal cycle characterization (Ankita Galinde)
1st prize in oral presentation at Design Innovation Center, SPPU 2018
Best oral presentation medal at World Congress on Chronomedicine, Lucknow 2018

2) Development of thermistor based breathing sensor (Aishwarya Bhurke)
1st prize in poster presentation at IIT Powai, 2014

3) Characterization of clock gene Per1 expression in leukocytes (Bhavishya Sarma)
1st prize in poster presentation at A.Nagar College, 2014


Completed undergraduate projects

1) Study and analysis of circadian rhythms: Effect on physiological & biochemical parameters in humans
Marziyah Mahadwala (2013)

2) Development of thermistor based breathing sensor
Aishwarya Bhurke (1st prize in poster presentation at IIT Powai, 2014)

3) Characterization of clock gene Per1 expression in human leukocytes
Bhavishya Sarma (1st prize in poster presentation at A.Nagar College, 2014)

4) Characterization of clock gene Per1 expression in human hair follicles
Tanmayi Naik (2015)

5) Malignancy inducing internal time tracking genes –Literature review
Sumedha Bhosale, Shraddha Chavan (2016)

6) Autorhythmometry of Body temperature, Nasal cycle, Blood pressure, Pulse rate, Lung capacity, Sleep-wake cycle  
Ankita Galinde, Jaee Ghawali, Aditi Karanjakar, Mithilesh Gidage (2016)

7) Correlation of alcohol addiction / menstrual cycle / bipolar disorder and chronotype                   
Abhishek Kulkarni, Ankita Galinde, Nikhila Kulkarni (2016)


Completed postgraduate projects

1) Development of nasal sensors for nasal cycle characterization
Ankita Galinde (1st prize in oral presentation at Design Innovation Center, SPPU 2018, Best oral presentation medal at World Congress on Chronomedicine, Lucknow 2018, Poster presentation at International Symposium on Biological Rhythms, Meerut, 2019)

2) Correlation of chronotype with psychiatric disorders and circadian rhythm analysis by actigraphy assessment
Nikhila Kulkarni (2018)

3) Temporal expression analysis of Cryptochrome and Octopamine receptor genes in Helicoverpa armigera
Minal Ayachit (2018)


Current projects

·         Analysis of daily rhythmicity in onion peel cell size
Variation in cell size under DD/DL/LL conditions at given temperature and season.

·         Rhythmic behavior of eclosion pattern in fruit fly
Variation in eclosion pattern of Drosophila melanogaster under DD/DL/LL conditions.

·        Correlation of Chronotype and Prakriti type
Development of online questionnaires for chronotype
(https://forms.gle/DWnsE1jrJ3mKmyrT6) 
and Pakriti type (https://forms.gle/wFyuLcNdAg1oVCR17) 
to generate enough data for validation of novel concept of ChronoPrakriti.

·         Characterization of phytomelatonin from Ayurvedic formulations
Isolation and characterization of phytomelatonin from traditional sleep inducing Ayurvedic formulations.

·         Chronotyping of type 2 diabetic patients
Correlation of chronotype with known cases of diabetes mellitus.

·         Development and Calibration of thermistor based / pressure based nasal sensor
Development of nasal sensor for standardization of nasal cycle so as to establish ultradian rhythm analysis as a diagnostic tool for internal clock dysfunction.


Prospective projects

·         Circadian rhythmicity in gut, salivary and skin microbiome
·         Correlation of Chronotype / Prakriti type / Enterotype
·         Standardization of chronotype questionnaire for specific age groups / diseases
·         Standardization of nasal cycle in control population
·         Development of nasal cycle as a diagnostic tool for neurodegenerative disorders


Training courses

Certificate courses
·         Introductory course in Chronobiology
·         Basic course in Chronobiology
·         Advanced course in Chronobiology

Workshops / Seminars
·         Hands-on activities for school students
·         Seminar for School / College faculties
·         Chronotherapeutics for professionals


Elective courses designed for various life science streams

·         Animal Chronobiology
·         Plant Chronobiology
·         Microbial Chronobiology
·         Ecological Chronobiology
·         Chronobiotechnology
·         Clinical Chronobiology


Outreach activities for popularization of Chronobiology

·         Monthly Newsletter
Know Thou Biological Clock


·         Monthly open forum
Chronobiology Saturday Club


·         Monthly / Customized lifestyle management workshops
Its time to tune your ChronoPrakriti
Link for registration: https://forms.gle/b1XZpVi5cYZkHH9i6

Tuesday, April 30, 2019

What is Jet Lag? Causes, Symptoms, & Treatments for Jet Lag

Everyday nearly 2 million people board planes to travel to destinations far from their homes. Many of these people will cross multiple time zones ending up in new locations many hours ahead or behind of what the traveler is used to.

Considering our long history as a people, rapid travel is a very new development. One in which people's biological makeup is still having difficulty adjusting to. Many travelers experience difficulty sleeping and trouble staying awake or alert when they arrive at a new location. This common occurrence is known as jet lag.

What is Jet Lag

Jet lag is a physiological condition that disrupts a person's sleep due to rapid travel across multiple time zones (usually 2 or more) and causes an imbalance to the traveler's circadian rhythm.


Your circadian rhythm is an ingrained biological clock that regulates periods of sleep and wakefulness. The circadian rhythm also influences other biological factors such as body temperature, times for eating, and the regulation of certain hormones. These functions are calibrated by a group of cells called the suprachiasmatic nucleus (SCN) located in the hypothalamus.

The SCN is connected to the optic nerves and senses changes in daylight that help it regulate certain functions of the body. It uses the presence (or lack) of daylight as it's primary measurement in balancing these functions. It tells us that when there is daylight, that it's time to be awake, and when it is dark, it's time to be asleep. Your circadian rhythm is set to match the environment in which you live in.

When traveling long distances over short periods of time, your circadian rhythm is slow to adjust to the new cycles of daylight and darkness. Your body wants to sleep when it's night back home, and to be awake when it's daytime back home. Jet lag manifests when your internal clock is out of sync with your current location's external clock.

Jet lag only occurs when traveling in westward or eastward directions two or more time zones away. Jet lag does not occur when traveling northward or southward (even over long distances) unless multiple time zones are crossed.

Jet Lag Symptoms

Symptoms of jet lag can vary due to factors such as direction of travel, and how many time zones crossed. The more time zones crossed the more severe your symptoms will become due to the vast time differences between your new destination and the location of your home.
Depending on the direction of travel, your symptoms in your new destination will differ. Eastward travel, where you "lose" time, will have different effects on your circadian rhythm than westward trave,l where you "gain" time.
Age also plays a factor in the severity of jet lag symptoms and the time it takes to recover. Older adults usually have more difficulty adjusting to time differences than younger adults and children.

Here are some common symptoms of jet lag:

Disturbed sleep
 Insomnia
• Daytime fatigue
• Difficulty concentrating
Stress
 Confusion
 Trouble functioning
 Headaches
 Irritability
 Stomach problems such as indigestion or irregular bowel movements
 Traveling eastward can lead to poor sleep upon arrival and trouble falling asleep
 Traveling westward can lead to early awakenings, interrupted sleep, and frequent waking during sleep

Other factors present during travel can cause problems. Being cramped up during long flights can lead to leg, back, and other muscle discomfort.The pressurized air in the cabins of planes lowers the amounts of oxygen in the blood leading to headaches, dehydration, and a general discomfort.

Jet Lag Treatments

Fortunately for most travelers, jet lag is a temporary condition that can be quickly remedied and rarely requires professional intervention or therapy.

As a general rule of thumb, when traveling east it takes about one day of recovery for each time zone crossed, and half the amount of time for westward travel.

Jet lag has a maximum circadian rhythm disruption of up to twelve hours.

Tips for realignment

Adjust your schedule in advance. Before traveling begin by trying to adapt to the sleep patterns of your new destination. If traveling east, begin going to bed 30 minutes earlier each day until you're closely in sync with the bedtime of your future location. If traveling west, do the opposite by staying up a little later each night.

Arrive early. If traveling for work and want to be awake for important business, arrive at your destination early to give you more time to adjust to the new schedule.

Expose yourself to natural light. Your circadian rhythm is greatly influenced by sunlight exposure. Getting out into the daylight at key times can help you adjust your body clock much faster. When traveling west, expose yourself to outside light early in the mornings but avoid it during late afternoons and evenings. When traveling east, avoid early morning light, and expose yourself to late afternoon/evening light. Artificial light can also to treat jet lag in similar ways that it is used to treat shift work sleep disorder and seasonal affective disorder. However, if considering bright light therapy, discuss it with your doctor first to make sure you're getting the right amount of exposure at the right times.

Avoid alcohol and caffeine. Caffeine is a stimulant and its effects can last much longer than desired making getting into a new sleep routine difficult. Alcohol makes you drowsy, and many believe that it helps induce sleep. While it's true that alcohol can aid in falling asleep, it often disturbs your sleep and reduces the quality of sleep with frequent awakenings and trips to the bathroom.

Take melatonin supplements. Melatonin is a hormone that is secreted by our bodies to help us fall asleep. Taking 3 milligrams of melatonin supplements approximately 3 hours before bedtime can help aid in falling asleep. However, not all research concludes that melatonin supplements are effective in treating jet lag. If you're considering using melatonin for jet lag treatment, ask your doctor for recommendations first.

Drink plenty of water. To avoid dehydration and headaches on long flights, keep yourself well hydrated by drinking plenty of water and avoiding alcohol and caffeine.

Use sleeping aids. If you're trying to sleep on the plane in anticipation of your new upcoming sleep schedule, try using blindfolds to block out light, earplugs to block out noise, and a neck pillow to get as comfortable as possible.

Consider medications. Talk to your doctor about taking medications that can promote wakefulness if trying to adapt to eastward travel, or sleep medications for westward travel.

For most travelers, jet lag is easily remedied after a few days in a new location. However, if your trip is only a few days long before you plan on returning home, it is often best to maintain your regular schedule so that you're not once again readjusting to a new time when you arrive back home shortly.

For frequent flyers, pilots, flight attendants, and airline crew, jet lag can become a recurring problem. If you fit into this category of flyers, you may want to consult with a sleep specialist. Sleep specialists are highly trained in helping people shift their circadian rhythms by offering advice and prescriptions for a variety of treatments including bright light therapy, melatonin supplements, and other medications.