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Saturday, December 30, 2017

Nobel Prize Lectures by 2017 Nobel prize winners for their work in elucidating clock mechanism

Michael W. Young - Nobel Lecture

Time Travels: A 40 Year Journey from Drosophila's Clock Mutants to Human Circadian Disorders


Michael Rosbash - Nobel Lecture

The Circadian Clock, Transcriptional Feedback and the Regulation of Gene Expression


Jeffrey C. Hall - Nobel Lecture

The Little Flies: Multifaceted Basic Research Coming Out Better than Intended


Lectures delivered on 7 December 2017 at Aula Medica, Karolinska Institutet in Stockholm.

https://www.nobelprize.org/nobel_prizes/medicine/laureates/2017/rosbash-lecture.html

Wednesday, November 29, 2017

Nobel prize award ceremony - 10th December 2017

Functioning of our inner clock
Most living organisms anticipate and adapt to daily changes in the environment. During the 18th century, the astronomer Jean Jacques d'Ortous de Mairan studied mimosa plants, and found that the leaves opened towards the sun during daytime and closed at dusk. He wondered what would happen if the plant was placed in constant darkness. He found that independent of daily sunlight the leaves continued to follow their normal daily oscillation Plants seemed to have their own biological clock.

Other researchers found that not only plants, but also animals and humans, have a biological clock that helps to prepare our physiology for the fluctuations of the day. This regular adaptation is referred to as the circadianrhythm, originating from the Latin words circa meaning "around" and diesmeaning "day". But just how our internal circadian biological clock worked remained a mystery.
During the 1970's, Seymour Benzer and his student Ronald Konopka asked whether it would be possible to identify genes that control the circadian rhythm in fruit flies. They demonstrated that mutations in an unknown gene disrupted the circadian clock of flies. They named this gene period. But how could this gene influence the circadian rhythm?
This year's Nobel Laureates, who were also studying fruit flies, aimed to discover how the clock actually works. In 1984, Jeffrey Hall and Michael Rosbash, working in close collaboration at Brandeis University in Boston, and Michael Young at the Rockefeller University in New York, succeeded in isolating the period gene. Jeffrey Hall and Michael Rosbash then went on to discover that PER, the protein encoded by period, accumulated during the night and was degraded during the day. Thus, PER protein levels oscillate over a 24-hour cycle, in synchrony with the circadian rhythm.
The next key goal was to understand how such circadian oscillations could be generated and sustained. Jeffrey Hall and Michael Rosbash hypothesized that the PER protein blocked the activity of the period gene. They reasoned that by an inhibitory feedback loop, PER protein could prevent its own synthesis and thereby regulate its own level in a continuous, cyclic rhythm 
Simplified illustration of the feedback regulation of the period gene
The figure shows the sequence of events during a 24h oscillation. When the period gene is active, period mRNA is made. The mRNA is transported to the cell's cytoplasm and serves as template for the production of PER protein. The PER protein accumulates in the cell's nucleus, where the period gene activity is blocked. This gives rise to the inhibitory feedback mechanism that underlies a circadian rhythm.
The model was tantalizing, but a few pieces of the puzzle were missing. To block the activity of the period gene, PER protein, which is produced in the cytoplasm, would have to reach the cell nucleus, where the genetic material is located. Jeffrey Hall and Michael Rosbash had shown that PER protein builds up in the nucleus during night, but how did it get there? In 1994 Michael Young discovered a second clock gene, timeless, encoding the TIM protein that was required for a normal circadian rhythm. In elegant work, he showed that when TIM bound to PER, the two proteins were able to enter the cell nucleus where they blocked period gene activity to close the inhibitory feedback loop.
The molecular components of the circadian clock.
Simplified illustration of the molecular components of the circadian clock.
Such a regulatory feedback mechanism explained how this oscillation of cellular protein levels emerged, but questions lingered. What controlled the frequency of the oscillations? Michael Young identified yet another gene, doubletime, encoding the DBT protein that delayed the accumulation of the PER protein. This provided insight into how an oscillation is adjusted to more closely match a 24-hour cycle.
The biological clock is involved in many aspects of our complex physiology. We now know that all multicellular organisms, including humans, utilize a similar mechanism to control circadian rhythms. A large proportion of our genes are regulated by the biological clock and, consequently, a carefully calibrated circadian rhythm adapts our physiology to the different phases of the day. Since the seminal discoveries by the three laureates, circadian biology has developed into a vast and highly dynamic research field, with implications for our health and wellbeing.
The circadian clock
The circadian clock anticipates and adapts our physiology to the different phases of the day. Our biological clock helps to regulate sleep patterns, feeding behavior, hormone release, blood pressure, and body temperature.
https://www.nobelprize.org/nobel_prizes/medicine/laureates/2017/press.html 

Wednesday, October 4, 2017

Nobel prize in medicine 2017 for biological clock research

2017-10-02

The Nobel Assembly at Karolinska Institutet has today decided to award
the 2017 Nobel Prize in Physiology or Medicine
jointly to
Jeffrey C. Hall, Michael Rosbash and Michael W. Young

for their discoveries of molecular mechanisms controlling the circadian rhythm
https://www.nobelprize.org/nobel_prizes/medicine/laureates/2017/press.html

Saturday, September 30, 2017

Links between gut bacteria, weight gain and circadian rhythm

The obesity epidemic is one of the fastest growing threats to public health. More than 70 percent of American adults are currently overweight or obese, with other countries catching up quickly. This is putting our population at higher risk of a wide variety of preventable diseases. Despite a multi-billion dollar diet industry, we continue to get larger and larger. Could this really be entirely due to our unhealthy diets? New research on gut bacteria and weight gain suggests that this dangerous trend is not just due to our food choices, but to changes in our gut bacteria.
Several major studies have linked gut bacteria and weight gain. Mice fed high-calorie diets are more likely to gain weight when they have certain imbalances of gut bacteria. Humans, similarly, are more likely to be obese when they have high levels of specific gut bacteria such as Firmicutes. Our microbiome is an integral part of our health, so these imbalances can also lead to vitamin malabsorption, fatigue, depression and a wide variety of common conditions.
This is significant because the balance of human GI bacteria, also known as our microbiome, is rapidly changing. Cultures that eat a lot of whole grains and vegetables have very different kinds of bacteria in their intestines. As our eating habits change, our gut bacteria are rapidly changing in response. Our food choices do not just add to the number of calories we eat, but also the way these calories are processed. But how can gut bacteria cause weight gain and even obesity? The circadian rhythm of the GI tract may be the link.
Like all organ systems, our GI tract has a distinctive circadian rhythm. This rhythm is partially set by external factors, especially what times we eat. This, in turn, affects gut bacteria. Bacteria, like humans, partially set their internal clocks by what times they are most active. When we eat, they also must “eat.”
Changing our mealtimes or our sleep-wake cycles can dramatically alter the circadian rhythms of bacteria in our GI tract. Some bacteria flourish under these changes and can quickly become the predominant bacteria in our intestines when we rapidly change our sleep-wake cycles. In turn, these bacteria appear to contribute to weight gain and obesity. Until recently, this was believed to be the reason for the link between jet lag and weight gain. However, new research suggests that the bacteria themselves may affect our intestinal circadian rhythms as much as our internal clocks affect them.
Researchers studied how a high-fat diet affected two populations of mice: one with a typical microbiome and one bred to have no GI bacteria at all. The ones with no GI bacteria handled their unhealthy diet much better than the other group. When researchers looked closer at the data, this appeared to be due to an intestinal protein called NFIL3.
Mice that had a normal microbiome had higher levels of a protein called NFIL3. NFIL3 is an important cue for the intestines, telling them how much fat to absorb. It is released in a cyclic manner, which helps our circadian rhythm to regulate food intake. Mice with no bacteria produce extremely low levels of NFIL3 on a cyclic basis and thus absorb very little fat even when eating a very high-fat diet. Gut bacteria appear to somehow stimulate NFIL3 production regardless of the time of day, effectively hijacking the circadian rhythm of the intestinal tract. This indiscriminate absorption of fat may, in turn, be one of the mechanisms by which some gut bacteria cause weight gain.
Maintaining a healthy and diverse microbiome is key to whole-body health and a reasonable weight. If you are struggling to develop healthy intestinal bacteria, consider the following strategies:
  • Eat a great deal of fiber, especially from plant foods such as whole grains, fruits and vegetables.
  • Refuse refined and processed foods such as white sugar that encourage the growth of less healthy bacteria.
  • Enjoy fermented foods such as yogurt and sauerkraut.
  • Use fewer antacids and other medications that interfere with gut bacterial health.
  • Keep your sleep-wake cycles steady, as these can affect your bacterial balance.
  • Consider taking a daily probiotic supplement to keep a steady intake of beneficial bacteria.
These simple changes can change your microbiome in positive ways by seeding your intestines with the right kind of bacteria while discouraging the growth of bacteria that contribute to obesity.
For many Americans, our diets have led to a vicious cycle. Our dysregulated circadian rhythm leads to changes in bacteria, which, in turn, further affect our circadian rhythm. This can lead to obesity and other dangerous health conditions. However, there is hope. There are ways to achieve balance in your gut bacteria and thus change the way your body metabolizes food, stopping the cycle once and for all.

https://www.chronobiology.com/gut-bacteria-can-hijack-intestinal-circadian-rhythm-causing-weight-gain/

Wednesday, August 30, 2017

Project work for UG/PG life science students for academic year 2017-18

Third batch of  Project work for UG/PG life science students for academic year 2017-18 has been started from 19th August 2017.

Late registration is allowed till first week of September.

Register at: http://goo.gl/forms/rHi8gypfxGyzQ03C2

Saturday, July 29, 2017

Chronobiology outreach programs for all age groups and background

Select the programs / workshops suitable for you

Most of the programs start every year in August. Can be personalized if sufficient number of participants are avaialble.

1) Project work for higher secondary school children

- Observation of cyclic phenomenon in nature

- Appreciating all living matter undergoing rhythmicity

- Report writing on cyclic activities in humans


2)  Project work for UG / PG life science students

- Chronotype analysis of predefined population

- Statistical analysis of biological rhythmic data

- Report writing on data analysis and interpretation


3) Workshop for life science teachers

- Lecture series on basics of chronobiology

- Designing of experiments in chronobiology

- Incorporation on chronobiology in curriculum


4) Workshop for professionals with odd work schedule 
     [IT professionals/shift workers/frequent flyers]

- Lecture series on basics of biological clock

- Guidance on synchronizing external / internal clock

- Circadian rhythm in health and disease


5) Consultancy for patients with metabolic disorders

- Chronotype analysis and counseling

- Clock genes analysis and counseling

- Chronome analysis

Saturday, July 8, 2017

Announcement of Project Work for Academic year 2017-18

           Institute of Chronobiology Education & Research 
(जैव-चक्रीय आवर्तन प्रशिक्षण आणि संशोधन संस्था)
                                                                                                                      
Final year project work for UG & PG life science students



Chronobiology
Chronobiology is a multidisciplinary branch of science dealing with study of biological rhythms. The free-running biological rhythms reflect the endogenous mechanisms of cyclic temporization whose expression is morphologically seen as an internal clock called body clock.

Biological rhythms
All levels of biological integration, such as ecosystem, population, group, individual, organ-system, organ, tissue, cell, and subcellular structures exhibit rhythms with diverse frequencies. The periods of most of the documented biological rhythms match with that of any one of geophysical cycles present in the nature such as ultradian, circadian, infradian or circannual rhythms. 

Genetics of biological rhythms
There are at least nine clock genes that play key role in the mammalian body clock.  The temporal effect of genetic programming on genome is known as chronome. A branch of chronobiology dealing with chronome analysis is called chronomics.

Chronobiometry
Chronobiology can be studied either by use of model systems or by means of autorhythmometry. Chronobiological data is analyzed by inferential and non-inferential chronobiometry. Bio-rhythmic data analysis requires special statistical tools due to its complexity.

Chronoptherapy
Chronobiological approach of disease diagnosis and management has a lot of untapped potential. We need sufficient clinical data to validate this hypothesis. Most of the life style diseases that we face today have circadian disruption as the major reason which is not at all considered during prognosis.


Project details

Registration options:
By Phone/Email/Registration by filling out the form at link: http://goo.gl/forms/rHi8gypfxGyzQ03C2

Duration:  12th August 2017 – 12th May 2018

Nature of project work

Seminars – one interactive session / week on Saturday 4 – 6 pm
Data collection / analysis – Minimum two readings per day for six months on self and/or on volunteers.
Midterm and final evaluation – Open book test

Project report submission – Data compilation and interpretation

Course content (2C / 30 lectures)
Introduction to Chronobiology (5), Systemic of circadian system (7), Relevance of rhythmicity in human welfare (4), Chronobiometery (5), Nasal cycle (7), Biological rhythm as diagnostic tool (2)

Literature
Seminars, PPTs, Videos, Research articles
Reference book: Chronobiology – Biological timekeeping; Edited by Dunlap, Loros, & DeCoursey

Fees: Not uniform / based on interview with the Mentor


Highlights

ü  Understanding the dimension of time in biological systems
ü  Firsthand experience of statistical analysis of biological rhythmic data
ü  Work experience at the interface of research and diagnostic application of biological rhythm
ü  Certificate of completion from ICER


-------------------------------------------------------------------------------------------------------------------------

Project coordinator

Prashant S. Duraphe, PhD (University of Würzburg, Germany)

Contact details: 8888810554/02025519099, duraphe@gmail.com,

Friday, June 30, 2017

Institute of Chronobiology Education and Research

Biological Rhythm Research Laboratory is now Institute of Chronobiology Education and Research

Project work in Chronobiology for academic year 2017-18 will start in August 2017

More details will be updated soon.

Saturday, May 13, 2017

Chronobiology - A science of biological rhythm

Scope of Biological Rhythm Research Laboratory

-  Project work for undergraduates and postgraduates in life sciences

-  Popular courses / Workshops for various age groups / professionals

-  Consultancy in Chronobiological assessment

-  Chronodiagnosis and Chronomanagement of diseases  


We have so far completed two batches of project work and about to start registration for third batch in June 2017.

We aim to become nodal agency for education, research and consultancy in Chronobiology. 

Biorhythm may be a pseudoscience but Biological Rhythm is definitely a true science with all the attributes of consistancy, reproducibility and accessibility. 

Chronobiological understanding is more relevant today in all speheres of life like never before due to our modern tech savvy life style.   

Unfortunately this subject is not being taught at any level of education at least in India except at few places. 

Biology teachers, Clinicians, Students, and a layperson alike are not aware of role of biological clock in health and disease. 

Misalignment of internal and external clock is the root cause of almost all the somatic and psychosomatic diseases that we face today. 

This blog will have at least one article per month about various aspects of chronobiology. 

Keep visitng...and make habit of analyzing rhythmic behavior of your own body. 

Monday, April 17, 2017

Peeling the layer off of the working of the master clock

Research suggests that an enzyme named glycogen synthase kinase 3 may be an important regulator of your brain’s master clock.
Do you feel more alert at certain times of the day? Whether you are a morning lark or a night owl, most of us have set times when we feel like we are on top of our game. This daily burst of energy is not a coincidence, but rather a function of your internal master clock. We are primed to have more energy and clearer thinking at certain parts of the day while feeling more sleepy and sedated at others. The cells and proteins that make up the suprachiasmatic nucleus of the brain regulate this individual daily cycle.
What Is the Suprachiasmatic Nucleus?
Coordinating your physiological activity with cues from the external world is a complicated task handled by a small part of your brain’s hypothalamus called the suprachiasmatic nucleus. This tiny organ is made of just 42,000 neurons that receive signals from the retinas of your eyes and communicates the information it receives to the corresponding areas of the brain. The suprachiasmatic nucleus, or SCN, has rhythmic pulses of activity that function as the ticking of your body’s master clock, cueing other parts of the brain and body to release hormones and other biochemicals that coordinate the sleep-wake cycle.
How are electrical activity and hormones coordinated? Like other parts of the brain, the SCN has a number of proteins that regulate its function. Recent research points to an enzyme called GSK3, or glycogen synthase kinase 3, as one of the most important “gears” of your master clock, acting as a coupler between electrical and biochemical impulses.

GSK3 and Your Sleep-Wake Cycle

When SCN cells are kept alive in a Petri dish, they exhibit distinctive cycles of high and low activity. These cycles follow a roughly 24-hour interval, or circadian rhythm. When in your brain rather than in a laboratory, the cells of the SCN still exhibit a circadian rhythm, but they also adjust activity according to cues from the outside world, such as light. Glycogen synthase kinase 3 appears to regulate this activity. It alters the magnitude of sodium flowing across the nerve cell membranes of the SCN. This flow of sodium, called the persistent sodium current, has increased sodium ions during the day that cause the SCN nerve cells to fire rapidly, creating a barrage of electrical impulses. At night, a decline in the number of sodium ions occurs and activity in the SCN subsequently decreases. GSK3 appears to be regulated by biochemical messengers, which is an important connection between the hormonal and electrical signals that comprise your brain activity.

Chronopharmacology, GSK3 and Setting the Time on Your Master Clock

New chronobiology research on GSK3 may have important implications in the treatment of human disease. GSK3 is the protein targeted by several common drugs. These include lithium, a common treatment for bipolar disorder, as well as riluzole, which is used to slow the progression of ALS or Lou Gehrig’s disease. These drugs are also sometimes used to treat severe cases of depression, anxiety and other mental illnesses.
Because GSK3 has changes in activity over a 24-hour cycle, there is a good chance that it may be more effective to take drugs acting on this enzyme at certain times of the day. Timing medications so they can be more effective and have fewer side effects, a practice known as chronopharmacology, is becoming increasingly common. Modern research has shown that chronopharmacology can affect the treatment of diseases as diverse as hypertension and breast cancer. People taking drugs that act on GSK3 may get more therapeutic effects along with fewer side effects if they take these medications at the right time.


Our SCN is a tightly controlled master clock that helps regulate the activity of every cell in our bodies through a complex set of electrical and biochemical gears. Research that reveals more about these gears and their functions can be used to more effectively treat devastating diseases and to improve overall health. The next time you feel like you are alert, energetic and on top of the world, you likely have GSK3 and other circadian proteins to thank.
https://www.chronobiology.com/peeling-layers-off-workings-master-clock/

Monday, March 20, 2017

Objective nasal cycle measurement without use of instrumentation

"Airflow through the nasal passages is normally asymmetrical because of alternating changes in nasal resistance in each nostril. The mechanism involves changes in sympathetic tone to the venous erectile tissue of the nasal mucosa; increased sympathetic vasoconstriction causing resistance to fall. The total nasal resistance to airflow remains fairly constant as changes between the nasal passages tend to be reciprocal so that the patient is usually unaware of the phenomenon.....The reason for its existence is uncertain. A simple explanation is that it permits one side of the nose to go through a rest period and recover from the minor trauma of conditioning the inspired air."

For this exercise you'll need to carry around with you a small, clean mirror. You're going to hold the mirror underneath your two nostrils, so that it's just touching your upper lip. Leave it there as you normally inhale and exhale a few times -- don't change your pattern of breathing (see the figure on the left below). This will produce two "clouds" of condensation on the mirror, one associated with each nostril (see the figure on the right below). Judge which "cloud" is larger, left or right, and record that judgment along with the time of day you made it. Sometimes the judgment will be very easy (the differences will be obvious), but other times the differences may be subtle. Also, because the "borders" of the condensation cloud taper off gradually, you're going to have to adopt some criterion for what constitutes "the edges" of each cloud and you'll need to apply that criterion each and every time you make judgments.

Repeat this exercise every 20 minutes during a 12-hour period, so that you'll accumulate a total of 36 pairs of measurements. If it is impossible to make judgments at the appropriate time then do so as soon as possible after that and make a note when that judgment was made. After you've collected your data, plot the results in the form of a graph: time will be plotted along the horizontal axis and "larger nostril" will be plotted along the vertical axis (see example graph below). If you're like 80% of people, the graph will fluctuate over time (meaning that when one patch of condensation is small the other will be large, and vice versa). From this graph you should be able to extract your nasal cycle: this is the duration of time it takes for you to go through one complete cycle of diameter change.





Monday, February 6, 2017

The Immune System and Sleep

Are you suffering from a cold? According to a new study on the immune system and sleep, getting enough rest may be crucial to fighting off illness this winter.
B cells and T cells and antigens—oh my! We know a great deal about how our immune systems work, which has led to exciting and life-saving discoveries such as vaccinations and antimicrobial medications. However, there are still huge gaps in scientific knowledge of immunity, especially in the area of how it is affected by lifestyle. Most people intuitively know that eating an unhealthy diet or exhausting ourselves will leave us more prone to illness. While our knowledge in this area is hardly complete, recent studies have made interesting conclusions about the complexities of the immune system and sleep.

The Mystery of the Missing T Cells

Not Getting Enough Sleep? Your Immune System Could be Suffering 1What happens to your immune system when you sleep? Researchers drew blood from healthy volunteers after a solid night of sleep and after a night of wakefulness. The results were surprising: Those who had slept well had lower numbers of T cells in their bloodstream. On the other hand, those that had been awake had much higher numbers of all kinds of T cells.
Where did the missing T cells go? Based on prior studies of sleep and the immune system, researchers believe that they may have migrated to the lymph nodes, which is where T cells are “reset” and programmed to face new challenges. However, this is still merely a hypothesis. While this was a relatively small study, it raises new questions about the relationship between our immune system and sleep. We know that people who get regular sleep have stronger immune systems, but researchers are not entirely sure why.

The Immune System and Sleep: New Links

This study adds to a growing body of scientific knowledge about sleep and the immune system. Prior studies have found that getting enough sleep leads to higher levels of memory T cells, which are the cells responsible for recognizing and eliminating illnesses we have encountered before.
While this may seem to conflict with the recent study mentioned above, keep in mind that immune function fluctuates widely over the course of a day. The volunteers in the aforementioned study were tested early in the morning when, theoretically, immune cells are generally resetting for the day. This study looked at overall T cell levels throughout the day. As in all areas of human health, timing is important to immune function.

Excessive Sleepiness and Antibiotics

Understanding more about the immune system and sleep may help to reduce the usage of antibiotics and other antimicrobial drugs, reducing the rates of resistance. According to one recent study, a disorder called Excessive Daytime Sleepiness, or EDS, can lead to altered immune function. In fact, people with this disorder, which physiologically resembles constant sleep deprivation, are more likely to be infected with pathogenic microorganisms and more likely to require medication to clear these infections. People who are chronically fatigued have immune cells that are as sluggish as the rest of their sleep-deprived bodies, leading to increased infections and a lower chance of clearing these infections themselves.

Sleep: Better than Chicken Soup?

Not Getting Enough Sleep? Your Immune System Could be Suffering 2How much more likely are you to get sick if you are not getting enough rest? Research indicates that the sleep deprived are four times as likely to become ill from an infection they are exposed to than people who have adequate sleep. This can add up to a lot more time spent in bed with winter flus and summer colds. While many people cut back on sleep to keep up with the demands of their lives, this actually leads to lost productivity in the form of more sick days. Sleep appears to be just what the doctor ordered—although you certainly can still enjoy a bowl of chicken soup.
If you are trying to lead a healthy life, getting enough sleep is crucial. There are a variety of natural remedies available to people who cannot get the shut-eye they need, such as melatonin and light therapy. Sleepless nights may be more than an inconvenience, but a very real threat to your health as well.
https://www.chronobiology.com/getting-enough-sleep-immune-system-suffering/

Sunday, January 8, 2017

Second batch has started on 15th December, Registration is extended till 15th January

Due to academic calender 15th December deadline was not convenient for many students. Hence new registrations are allowed till 15th Jan 2017. 

Late students have to make up for earlier lectures as the batch was started as per scheduled on 15th Dec 2016.

The details of the registration can be found in earlier post.